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Witness for a Will
O ye who believe! When death approaches any of you, (take) witnesses among yourselves when making bequests,- two just men of your own (brotherhood) or others from outside if ye are journeying through the earth, and the chance of death befalls you (thus). If ye doubt (their truth), detain them both after prayer, and let them both swear by Allah: "We wish not in this for any worldly gain, even though the (beneficiary) be our near relation: we shall hide not the evidence before Allah: if we do, then behold! the sin be upon us!"
But if it gets known that these two were guilty of the sin (of perjury), let two others stand forth in their places,- nearest in kin from among those who claim a lawful right: let them swear by Allah: "We affirm that our witness is truer than that of those two, and that we have not trespassed (beyond the truth): if we did, behold! the wrong be upon us!"
The first verse is fine as far as swearing is concerned but the next assumes that the witnesses' lies are caught before the person dies. If they are caught after the person's death, replacing them is pointless and the will also cannot be supported by a true witness.
Kn
And when Allah saith: O Jesus, son of Mary! Didst thou say unto mankind: Take me and my mother for two gods beside Allah? he saith: Be glorified! It was not mine to utter that to which I had no right. If I used to say it, then Thou knewest it. Thou knowest what is in my mind, and I know not what is in Thy Mind. Lo! Thou, only Thou, art the Knower of Things Hidden?
An all knowing-deity asks a question but he needs to be reminded by Jesus that he already knows the answer.
Having a Son Without a Wife
To Him is due the primal origin of the heavens and the earth: How can He have a son when He hath no consort? He created all things, and He hath full knowledge of all things.
An almighty God who is capable of doing anything can logically have a son without a consort. He may also define a "son" in his own sense. But this verse compares him with the human way of reproduction (need of an opposite sex) in order to rule out having a son.
Dhul Qarnin and the people who hardly understood words
Till, when he came between the two mountains, he found upon their hither side
a folk that scarce could understand a saying. They said: O Dhu'l-Qarneyn! Lo! Gog and Magog are spoiling the land. So may we pay thee tribute on condition that thou set a barrier between us and them? He said: That wherein my Lord hath established me is better (than your tribute). Do but help me with strength (of men), I will set between you and them a bank. Give me pieces of iron - till, when he had levelled up (the gap) between the cliffs, he said: Blow! - till, when he had made it a fire, he said: Bring me molten copper to pour thereon. And (Gog and Magog) were not able to surmount, nor could they pierce (it). He said: This is a mercy from my Lord; but when the promise of my Lord cometh to pass, He will lay it low, for the promise of my Lord is true.
Dhul Qarnain meets a tribe that hardly understands a word. Yet, a long conversation with them follows and it is well-understood.
All other gods will burn in Hell
Lo! ye (idolaters) and that which ye worship beside Allah are fuel of hell. Thereunto ye will come. If these had been gods they would not have come thither, but all will abide therein.
This verse can have two meanings. One is that other gods exist (in contradiction to monotheism, the main argument of Islam). If this is not true then the other meaning is that the idols of these false gods will burn in hell which is an absurdity.
Infinite Loop
And lo! it is a revelation of the Lord of the Worlds, Which the True Spirit hath brought down Upon thy heart, that thou mayst be (one) of the warners, In plain Arabic speech. And lo! it is in the Scriptures of the men of old.
Jesus pays Alms till he is Alive but he is never Crucified
And because of their saying: We slew the Messiah, Jesus son of Mary, Allah's messenger - they slew him not nor crucified him, but it appeared so unto them; and lo! those who disagree concerning it are in doubt thereof; they have no knowledge thereof save pursuit of a conjecture; they slew him not for certain. But Allah took him up unto Himself. Allah was ever Mighty, Wise.
He spake: Lo! I am the slave of Allah. He hath given me the Scripture and hath appointed me a Prophet, "And He hath made me blessed wheresoever I be, and hath
enjoined on me Prayer and Charity as long as I live; Jesus starts talking while in his cradle that he will pay alms till he is alive. Taking this and verse 4:157 into consideration, Jesus is still paying alms in heaven. We must wonder who is getting these alms. It is clear that Jesus has paying for nearly 2000 years if Muslims are correct in claiming that he did not die.
Lot's Wife or an Old Woman
They said: "If thou desist not, O Lut! thou wilt assuredly be cast out!" He said: "I detest your doings." "Oh my Lord! deliver me and my family from such things as they do!" So We delivered him and his family, - all except an old woman who lingered behind. But the rest We destroyed utterly.
But We saved him [Lot] and his family, except his wife: her We destined to be of those who lagged behind.
Firstly, there is a contradiction about who lagged behind, an old woman or Lot's wife. If they are one and the same, it is not befitting for Allah to call her "an old woman." The other issue is that Allah wanted this woman to die for no apparent reason other than it being her predestination.
Cause of Lightning
And among His Signs, He shows you the lightning, by way both of fear and of hope, and He sends down rain from the sky and with it gives life to the earth after it is dead:
The Quran claims that Lightning is a sign of Allah, it frightens people and gives them hope. But lightning is a complex electrical phenomenon and somebody without this knowledge would simply attribute it to Allah.
Trees-Pens analogy
And if all the trees on earth were pens and the ocean (were ink), with seven oceans behind it to add to its (supply), yet would not the words of Allah be exhausted (in the writing): for Allah is Exalted in Power, full of Wisdom.
In such a case, it is difficult to understand why Allah stops after just 6000 verses and gives them as the last revelation to mankind through the last prophet.
Solomon's death
Then, when We decreed (Solomon's) death, nothing showed them his death except a little worm of the earth, which kept (slowly) gnawing away at his staff: so when he fell down, the Jinns saw plainly that if they had known the unseen, they would not have tarried in the humiliating Penalty (of their Task).
The Jinns are working for Solomon and obeying his orders but he dies standing. They dont know it for a long time, even though he stopped talking. Both of these claims are unbelievable.
Rainfall and Resurrection
The author claims several times that rainfall brings trees of a dead land to life, so in the same way, people will be brought back to life. This is a non-sequitur fallacy. One is a natural process; the other is not possible, hence it cannot be deduced from the first.
It is Allah Who sends forth the Winds, so that they raise up the Clouds, and We drive them to a land that is dead, and revive the earth therewith after its death: even so (will be) the Resurrection!
That sends down (from time to time) rain from the sky in due measure;- and We raise to life therewith a land that is dead; even so will ye be raised (from the dead);-
50000 Year Journey
The angels and the spirit ascend unto him in a Day the measure whereof is (as) fifty thousand years:
Many apologists claim that this verse is about the day of judgement like its preceding and succeding verses but it is written in the present tense. Others assume that it is a miracle predicting the theory of relativity and differences in timeframes etc. Even if it is a miracle, its only meaning can be that angels take 50000 human years to reach God which is very slow, given he is omnipresent.